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A parser for Tiled Data File (TDF) format?
file format
parser
IO
TDF
IGV
8.2 years ago
Henrik Bengtsson
★ 2.4k
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Comment: Problem installing ChAMP on a MacBook
by
Galia
• 0
Yes, I ran those lines, I'm copying the full transcript (I just copied the error before). Note that I don't update the requested packages, …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
ATpoint
★ 4.1k
You can try other frameworks, but as I said, three timepoints are hardly a timecourse. Some clever combinations of filtering your DEGs for …
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
pangtaihin
• 0
Thank you very much ATpoint, but DESeq2, edgeR, limma are not specialized time-course framework, I think we might seek for another framewor…
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
by
ATpoint
★ 4.1k
High counts are generally less prone to noise compared to low counts. Bottom line is that you should stick to specialized testing framework…
Comment: Problem installing ChAMP on a MacBook
by
ATpoint
★ 4.1k
Did you run these lines? https://www.bioconductor.org/packages/release/bioc/html/ChAMP.html It is good practice to include code and error …
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Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Answer: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Answer: Trim/Filter out-of-bounds GRanges
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